plot.rfmatrix {qtl} | R Documentation |
Plot a slice (corresponding to a single marker) through the pairwise
recombination fractions or LOD scores calculated by
est.rf
and extracted with pull.rf
.
## S3 method for class 'rfmatrix' plot(x, marker, ...)
x |
An object of class |
marker |
A single marker name, as a character string. |
... |
Optional arguments passed to |
An object of class "scanone"
(as output by scanone
,
and which may be summarized by summary.scanone
or plotted
with plot.scanone
), containing the estimated recombination
fractions or LOD scores for the input marker against all others.
Karl W Broman, kbroman@biostat.wisc.edu
data(fake.f2) fake.f2 <- est.rf(fake.f2) marker <- markernames(fake.f2, chr=5)[6] lod <- pull.rf(fake.f2, "lod") plot(lod, marker, bandcol="gray70")